nlpmed_portal package

Subpackages

• nlpmed_portal.annotations package
  • Subpackages
    • nlpmed_portal.annotations.api package
      • Subpackages
        • nlpmed_portal.annotations.api.viewsets package
          • Submodules
      • Submodules
        • nlpmed_portal.annotations.api.router module
        • nlpmed_portal.annotations.api.serializers module
          • LabelValueSerializer
          • LabelCategorySerializer
          • ProjectListSerializer
          • ProjectDetailSerializer
          • PatientSerializer
          • SentenceSerializer
          • SectionSerializer
          • NoteSerializer
          • LabSerializer
          • PatientAnnotationListSerializer
          • PatientAnnotationDetailSerializer
          • ProjectMembershipListSerializer
          • ProjectMembershipDetailSerializer
          • TaskListSerializer
          • TaskDetailSerializer
          • BulkCreateTaskSerializer
          • ImportJobSerializer
          • AdjudicationSerializer
          • NERAnnotationSerializer
          • ExportAnnotationSerializer
          • PatientHistoryChangeSerializer
          • PatientHistorySerializer
        • nlpmed_portal.annotations.api.views module
          • AdjudicationViewSet
          • BaseViewSet
          • ExportAnnotationViewSet
          • ImportJobViewSet
          • LabViewSet
          • NERAnnotationViewSet
          • NoteViewSet
          • PatientAnnotationViewSet
          • PatientHistoryViewSet
          • PatientViewSet
          • ProjectMembershipViewSet
          • ProjectViewSet
          • TaskViewSet
  • Submodules
    • nlpmed_portal.annotations.admin module
      • LabelValueInline
        • LabelValueInline.model
        • LabelValueInline.extra
        • LabelValueInline.media
      • LabelCategoryInline
        • LabelCategoryInline.model
        • LabelCategoryInline.extra
        • LabelCategoryInline.inlines
        • LabelCategoryInline.media
      • ProjectAdmin
        • ProjectAdmin.inlines
        • ProjectAdmin.readonly_fields
        • ProjectAdmin.media
      • PatientAdmin
        • PatientAdmin.readonly_fields
        • PatientAdmin.media
      • SentenceInline
        • SentenceInline.model
        • SentenceInline.extra
        • SentenceInline.media
      • SectionInline
        • SectionInline.model
        • SectionInline.extra
        • SectionInline.inlines
        • SectionInline.media
      • NoteAdmin
        • NoteAdmin.inlines
        • NoteAdmin.readonly_fields
        • NoteAdmin.media
      • LabAdmin
        • LabAdmin.readonly_fields
        • LabAdmin.media
      • SectionAdmin
        • SectionAdmin.readonly_fields
        • SectionAdmin.media
      • PatientAnnotationAdmin
        • PatientAnnotationAdmin.readonly_fields
        • PatientAnnotationAdmin.formfield_for_manytomany()
        • PatientAnnotationAdmin.media
      • AdjudicationAdmin
        • AdjudicationAdmin.readonly_fields
        • AdjudicationAdmin.media
      • ProjectMembershipAdmin
        • ProjectMembershipAdmin.readonly_fields
        • ProjectMembershipAdmin.media
      • TaskAdmin
        • TaskAdmin.readonly_fields
        • TaskAdmin.media
      • ImportJobAdmin
        • ImportJobAdmin.readonly_fields
        • ImportJobAdmin.media
      • NERAnnotationAdmin
        • NERAnnotationAdmin.readonly_fields
        • NERAnnotationAdmin.media
    • nlpmed_portal.annotations.apps module
      • AnnotationsConfig
        • AnnotationsConfig.default_auto_field
        • AnnotationsConfig.name
        • AnnotationsConfig.ready()
    • nlpmed_portal.annotations.constants module
    • nlpmed_portal.annotations.models module
      • Project
        • Project.CLASSIFICATION
        • Project.NER
        • Project.ANNOTATION_TYPE_CHOICES
        • Project.history
        • Project.name
        • Project.description
        • Project.disp_range_months_before_idx
        • Project.disp_range_months_after_idx
        • Project.run_nlp
        • Project.annotation_type
        • Project.required_patient_annotations
        • Project.required_patient_adjudications
        • Project.created_at
        • Project.updated_at
        • Project.DoesNotExist
        • Project.MultipleObjectsReturned
        • Project.NotUpdated
        • Project.get_annotation_type_display()
        • Project.get_next_by_created_at()
        • Project.get_next_by_updated_at()
        • Project.get_previous_by_created_at()
        • Project.get_previous_by_updated_at()
        • Project.id
        • Project.import_jobs
        • Project.label_categories
        • Project.nlp_jobs
        • Project.nlp_setting
        • Project.objects
        • Project.patients
        • Project.project_memberships_project
        • Project.save_without_historical_record()
      • LabelCategory
        • LabelCategory.history
        • LabelCategory.name
        • LabelCategory.project
        • LabelCategory.DoesNotExist
        • LabelCategory.MultipleObjectsReturned
        • LabelCategory.NotUpdated
        • LabelCategory.id
        • LabelCategory.label_values
        • LabelCategory.objects
        • LabelCategory.project_id
        • LabelCategory.save_without_historical_record()
      • LabelValue
        • LabelValue.history
        • LabelValue.name
        • LabelValue.category
        • LabelValue.DoesNotExist
        • LabelValue.MultipleObjectsReturned
        • LabelValue.NotUpdated
        • LabelValue.adjudications
        • LabelValue.category_id
        • LabelValue.id
        • LabelValue.objects
        • LabelValue.patient_annotations
        • LabelValue.save_without_historical_record()
      • Patient
        • Patient.history
        • Patient.pat_id
        • Patient.index_date
        • Patient.project
        • Patient.created_at
        • Patient.updated_at
        • Patient.DoesNotExist
        • Patient.MultipleObjectsReturned
        • Patient.NotUpdated
        • Patient.adjudications
        • Patient.get_next_by_created_at()
        • Patient.get_next_by_index_date()
        • Patient.get_next_by_updated_at()
        • Patient.get_previous_by_created_at()
        • Patient.get_previous_by_index_date()
        • Patient.get_previous_by_updated_at()
        • Patient.id
        • Patient.labs
        • Patient.ner_annotations
        • Patient.notes
        • Patient.objects
        • Patient.patient_annotations
        • Patient.project_id
        • Patient.save_without_historical_record()
        • Patient.tasks_patient
      • Note
        • Note.history
        • Note.note_id
        • Note.note_text
        • Note.note_date
        • Note.TYPE_CHOICES
        • Note.note_type
        • Note.patient
        • Note.preprocessed_text
        • Note.predicted_label
        • Note.predicted_score
        • Note.important_sentences_count
        • Note.duplicate_sentences_count
        • Note.created_at
        • Note.updated_at
        • Note.DoesNotExist
        • Note.MultipleObjectsReturned
        • Note.NotUpdated
        • Note.adjudications
        • Note.get_next_by_created_at()
        • Note.get_next_by_note_date()
        • Note.get_next_by_updated_at()
        • Note.get_note_type_display()
        • Note.get_previous_by_created_at()
        • Note.get_previous_by_note_date()
        • Note.get_previous_by_updated_at()
        • Note.id
        • Note.ner_annotations
        • Note.note_sections
        • Note.objects
        • Note.patient_annotations
        • Note.patient_id
        • Note.save_without_historical_record()
      • Lab
        • Lab.history
        • Lab.lab_id
        • Lab.patient
        • Lab.component
        • Lab.collection_datetime
        • Lab.value
        • Lab.unit
        • Lab.abnormal
        • Lab.created_at
        • Lab.updated_at
        • Lab.DoesNotExist
        • Lab.MultipleObjectsReturned
        • Lab.NotUpdated
        • Lab.get_next_by_collection_datetime()
        • Lab.get_next_by_created_at()
        • Lab.get_next_by_updated_at()
        • Lab.get_previous_by_collection_datetime()
        • Lab.get_previous_by_created_at()
        • Lab.get_previous_by_updated_at()
        • Lab.id
        • Lab.objects
        • Lab.patient_id
        • Lab.save_without_historical_record()
      • Section
        • Section.history
        • Section.text
        • Section.start_index
        • Section.end_index
        • Section.note
        • Section.created_at
        • Section.updated_at
        • Section.important_sentences
        • Section.duplicate_sentences
        • Section.expanded_sentences
        • Section.DoesNotExist
        • Section.MultipleObjectsReturned
        • Section.NotUpdated
        • Section.get_next_by_created_at()
        • Section.get_next_by_updated_at()
        • Section.get_previous_by_created_at()
        • Section.get_previous_by_updated_at()
        • Section.id
        • Section.note_id
        • Section.objects
        • Section.save_without_historical_record()
        • Section.section_sentences
      • Sentence
        • Sentence.history
        • Sentence.text
        • Sentence.start_index
        • Sentence.end_index
        • Sentence.is_duplicate
        • Sentence.is_important
        • Sentence.is_expanded
        • Sentence.section
        • Sentence.DoesNotExist
        • Sentence.MultipleObjectsReturned
        • Sentence.NotUpdated
        • Sentence.id
        • Sentence.objects
        • Sentence.save_without_historical_record()
        • Sentence.section_id
      • PatientAnnotation
        • PatientAnnotation.event_date
        • PatientAnnotation.event_label_values
        • PatientAnnotation.comment
        • PatientAnnotation.patient
        • PatientAnnotation.annotator
        • PatientAnnotation.notes
        • PatientAnnotation.created_at
        • PatientAnnotation.updated_at
        • PatientAnnotation.history
        • PatientAnnotation.DoesNotExist
        • PatientAnnotation.MultipleObjectsReturned
        • PatientAnnotation.NotUpdated
        • PatientAnnotation.adjudications
        • PatientAnnotation.annotator_id
        • PatientAnnotation.get_next_by_created_at()
        • PatientAnnotation.get_next_by_updated_at()
        • PatientAnnotation.get_previous_by_created_at()
        • PatientAnnotation.get_previous_by_updated_at()
        • PatientAnnotation.id
        • PatientAnnotation.objects
        • PatientAnnotation.patient_id
        • PatientAnnotation.save_without_historical_record()
      • Adjudication
        • Adjudication.history
        • Adjudication.patient
        • Adjudication.event_date
        • Adjudication.event_label_values
        • Adjudication.adjudicator
        • Adjudication.notes
        • Adjudication.source_annotations
        • Adjudication.created_at
        • Adjudication.updated_at
        • Adjudication.DoesNotExist
        • Adjudication.MultipleObjectsReturned
        • Adjudication.NotUpdated
        • Adjudication.adjudicator_id
        • Adjudication.get_next_by_created_at()
        • Adjudication.get_next_by_event_date()
        • Adjudication.get_next_by_updated_at()
        • Adjudication.get_previous_by_created_at()
        • Adjudication.get_previous_by_event_date()
        • Adjudication.get_previous_by_updated_at()
        • Adjudication.id
        • Adjudication.objects
        • Adjudication.patient_id
        • Adjudication.save_without_historical_record()
      • ProjectMembership
        • ProjectMembership.history
        • ProjectMembership.assignee
        • ProjectMembership.project
        • ProjectMembership.group
        • ProjectMembership.assigner
        • ProjectMembership.created_at
        • ProjectMembership.updated_at
        • ProjectMembership.DoesNotExist
        • ProjectMembership.MultipleObjectsReturned
        • ProjectMembership.NotUpdated
        • ProjectMembership.assignee_id
        • ProjectMembership.assigner_id
        • ProjectMembership.get_next_by_created_at()
        • ProjectMembership.get_next_by_updated_at()
        • ProjectMembership.get_previous_by_created_at()
        • ProjectMembership.get_previous_by_updated_at()
        • ProjectMembership.group_id
        • ProjectMembership.id
        • ProjectMembership.objects
        • ProjectMembership.project_id
        • ProjectMembership.save_without_historical_record()
      • Task
        • Task.STATUS_CHOICES
        • Task.CLASSIFICATION
        • Task.NER
        • Task.ADJUDICATION
        • Task.TYPE_CHOICES
        • Task.assignee
        • Task.patient
        • Task.assigner
        • Task.task_type
        • Task.status
        • Task.created_at
        • Task.updated_at
        • Task.history
        • Task.DoesNotExist
        • Task.MultipleObjectsReturned
        • Task.NotUpdated
        • Task.assignee_id
        • Task.assigner_id
        • Task.get_next_by_created_at()
        • Task.get_next_by_updated_at()
        • Task.get_previous_by_created_at()
        • Task.get_previous_by_updated_at()
        • Task.get_status_display()
        • Task.get_task_type_display()
        • Task.id
        • Task.objects
        • Task.patient_id
        • Task.save_without_historical_record()
      • ImportJob
        • ImportJob.STATUS_CHOICES
        • ImportJob.project
        • ImportJob.user
        • ImportJob.import_file
        • ImportJob.import_format
        • ImportJob.import_target
        • ImportJob.import_missing_patients
        • ImportJob.column_map
        • ImportJob.date_format_map
        • ImportJob.new_rows_count
        • ImportJob.job_status
        • ImportJob.job_progress
        • ImportJob.error_message
        • ImportJob.created_at
        • ImportJob.updated_at
        • ImportJob.delete_import_file()
        • ImportJob.DoesNotExist
        • ImportJob.MultipleObjectsReturned
        • ImportJob.NotUpdated
        • ImportJob.get_import_target_display()
        • ImportJob.get_job_status_display()
        • ImportJob.get_next_by_created_at()
        • ImportJob.get_next_by_updated_at()
        • ImportJob.get_previous_by_created_at()
        • ImportJob.get_previous_by_updated_at()
        • ImportJob.id
        • ImportJob.objects
        • ImportJob.project_id
        • ImportJob.user_id
      • NERAnnotation
        • NERAnnotation.history
        • NERAnnotation.patient
        • NERAnnotation.annotator
        • NERAnnotation.note
        • NERAnnotation.spans
        • NERAnnotation.created_at
        • NERAnnotation.updated_at
        • NERAnnotation.DoesNotExist
        • NERAnnotation.MultipleObjectsReturned
        • NERAnnotation.NotUpdated
        • NERAnnotation.annotator_id
        • NERAnnotation.get_next_by_created_at()
        • NERAnnotation.get_next_by_updated_at()
        • NERAnnotation.get_previous_by_created_at()
        • NERAnnotation.get_previous_by_updated_at()
        • NERAnnotation.note_id
        • NERAnnotation.objects
        • NERAnnotation.patient_id
        • NERAnnotation.save_without_historical_record()
      • ExportAnnotation
        • ExportAnnotation.DoesNotExist
        • ExportAnnotation.MultipleObjectsReturned
        • ExportAnnotation.NotUpdated
        • ExportAnnotation.id
        • ExportAnnotation.objects
    • nlpmed_portal.annotations.permissions module
      • has_global_permission()
      • has_permission()
      • MethodBasePermission
        • MethodBasePermission.has_permission()
      • ScopedPermissionRequiredMixin
        • ScopedPermissionRequiredMixin.request
        • ScopedPermissionRequiredMixin.has_permission()
    • nlpmed_portal.annotations.signals module
      • recompute_tasks_for_patient()
      • attach_old_flags()
      • update_cnt_on_save()
      • update_cnt_on_delete()
      • clear_project_meta_cache()
      • delete_import_file_on_job_delete()
    • nlpmed_portal.annotations.task_dispatch module
      • dispatch_import_job()
    • nlpmed_portal.annotations.tasks module
      • run_import_job()
    • nlpmed_portal.annotations.urls module
    • nlpmed_portal.annotations.utils module
      • read_dataframe()
      • get_required_fields_for_import()
      • pivot_labs()
      • highlight_keywords()
      • highlight_sentences_in_note()
      • build_html_note_text()
      • build_html_hover_text()
      • annotations_to_buffer()
      • is_valid_annotation_lv()
      • build_annotation_window_start_map()
    • nlpmed_portal.annotations.views module
      • ProjectView
        • ProjectView.permission_required
        • ProjectView.template_name
        • ProjectView.COMPONENT_MODELS
        • ProjectView.get_context_data()
        • ProjectView.dispatch()
      • PatientView
        • PatientView.permission_required
        • PatientView.template_name
        • PatientView.get_context_data()
        • PatientView.dispatch()
      • PatientDetailView
        • PatientDetailView.model
        • PatientDetailView.permission_required
        • PatientDetailView.queryset
        • PatientDetailView.get_template_names()
        • PatientDetailView.get_context_data()
        • PatientDetailView.dispatch()
      • ProjectMembershipView
        • ProjectMembershipView.permission_required
        • ProjectMembershipView.template_name
        • ProjectMembershipView.get_context_data()
        • ProjectMembershipView.dispatch()
      • TaskView
        • TaskView.permission_required
        • TaskView.template_name
        • TaskView.dispatch()
• nlpmed_portal.contrib package
  • Subpackages
    • nlpmed_portal.contrib.sites package
• nlpmed_portal.management package
  • Subpackages
    • nlpmed_portal.management.api package
      • Submodules
        • nlpmed_portal.management.api.router module
        • nlpmed_portal.management.api.serializers module
          • UserListSerializer
          • UserDetailSerializer
          • UserSessionSerializer
          • GroupListSerializer
          • GroupDetailSerializer
          • FeedbackSerializer
        • nlpmed_portal.management.api.views module
          • UserViewSet
          • UserSessionViewSet
          • GroupViewSet
          • BackendViewSet
          • FeedbackViewSet
  • Submodules
    • nlpmed_portal.management.admin module
      • SystemMessageAdmin
        • SystemMessageAdmin.save_model()
        • SystemMessageAdmin.delete_model()
        • SystemMessageAdmin.media
      • LogEntryAdmin
        • LogEntryAdmin.list_display
        • LogEntryAdmin.get_fieldsets()
        • LogEntryAdmin.media
    • nlpmed_portal.management.apps module
      • ManagementConfig
        • ManagementConfig.default_auto_field
        • ManagementConfig.name
    • nlpmed_portal.management.constants module
    • nlpmed_portal.management.models module
      • User
        • User.DoesNotExist
        • User.MultipleObjectsReturned
        • User.NotUpdated
        • User.id
        • User.objects
      • Group
        • Group.DoesNotExist
        • Group.MultipleObjectsReturned
        • Group.NotUpdated
        • Group.id
        • Group.objects
      • Backend
        • Backend.DoesNotExist
        • Backend.MultipleObjectsReturned
        • Backend.NotUpdated
        • Backend.id
        • Backend.objects
      • Job
        • Job.DoesNotExist
        • Job.MultipleObjectsReturned
        • Job.NotUpdated
        • Job.id
        • Job.objects
      • Feedback
        • Feedback.user
        • Feedback.message
        • Feedback.created_at
        • Feedback.DoesNotExist
        • Feedback.MultipleObjectsReturned
        • Feedback.NotUpdated
        • Feedback.get_next_by_created_at()
        • Feedback.get_previous_by_created_at()
        • Feedback.id
        • Feedback.objects
        • Feedback.user_id
      • SystemMessage
        • SystemMessage.message
        • SystemMessage.history
        • SystemMessage.solo()
        • SystemMessage.DoesNotExist
        • SystemMessage.MultipleObjectsReturned
        • SystemMessage.NotUpdated
        • SystemMessage.id
        • SystemMessage.objects
        • SystemMessage.save_without_historical_record()
    • nlpmed_portal.management.permissions module
      • has_global_permission()
      • impersonate_other_users()
      • MethodBasePermission
        • MethodBasePermission.has_permission()
    • nlpmed_portal.management.urls module
    • nlpmed_portal.management.views module
      • UserListView
        • UserListView.permission_required
        • UserListView.model
        • UserListView.queryset
        • UserListView.context_object_name
        • UserListView.template_name
        • UserListView.dispatch()
      • GroupView
        • GroupView.permission_required
        • GroupView.template_name
        • GroupView.dispatch()
      • BackendView
        • BackendView.permission_required
        • BackendView.template_name
        • BackendView.dispatch()
      • JobView
        • JobView.permission_required
        • JobView.template_name
        • JobView.dispatch()
      • FeedbackView
        • FeedbackView.permission_required
        • FeedbackView.template_name
        • FeedbackView.dispatch()
• nlpmed_portal.nlp package
  • Subpackages
    • nlpmed_portal.nlp.api package
      • Submodules
        • nlpmed_portal.nlp.api.router module
        • nlpmed_portal.nlp.api.serializers module
          • EscapedNewlineCharField
          • EncodingFixerSerializer
          • PatternReplacerSerializer
          • WordMaskerSerializer
          • NoteFilterSerializer
          • SectionSplitterSerializer
          • SectionFilterSerializer
          • SentenceSegmenterSerializer
          • DuplicateCheckerSerializer
          • SentenceFilterSerializer
          • SentenceExpanderSerializer
          • JoinerSerializer
          • MLInferenceSerializer
          • NLPSettingSerializer
          • NLPSerializer
          • NlpProcessJobSerializer
          • DemoSerializer
        • nlpmed_portal.nlp.api.views module
          • MethodBasePermission
          • NLPViewSet
          • NlpProcessJobViewSet
          • VteBertDemoViewSet
          • BleedBertDemoViewSet
  • Submodules
    • nlpmed_portal.nlp.admin module
      • EncodingFixerInline
        • EncodingFixerInline.model
        • EncodingFixerInline.form
        • EncodingFixerInline.extra
        • EncodingFixerInline.media
      • PatternReplacerInline
        • PatternReplacerInline.model
        • PatternReplacerInline.form
        • PatternReplacerInline.extra
        • PatternReplacerInline.media
      • WordMaskerInline
        • WordMaskerInline.model
        • WordMaskerInline.form
        • WordMaskerInline.extra
        • WordMaskerInline.media
      • NoteFilterInline
        • NoteFilterInline.model
        • NoteFilterInline.form
        • NoteFilterInline.extra
        • NoteFilterInline.media
      • SectionSplitterInline
        • SectionSplitterInline.model
        • SectionSplitterInline.form
        • SectionSplitterInline.extra
        • SectionSplitterInline.media
      • SectionFilterInline
        • SectionFilterInline.model
        • SectionFilterInline.form
        • SectionFilterInline.extra
        • SectionFilterInline.media
      • SentenceSegmenterInline
        • SentenceSegmenterInline.model
        • SentenceSegmenterInline.form
        • SentenceSegmenterInline.extra
        • SentenceSegmenterInline.media
      • DuplicateCheckerInline
        • DuplicateCheckerInline.model
        • DuplicateCheckerInline.form
        • DuplicateCheckerInline.extra
        • DuplicateCheckerInline.media
      • SentenceFilterInline
        • SentenceFilterInline.model
        • SentenceFilterInline.form
        • SentenceFilterInline.extra
        • SentenceFilterInline.media
      • SentenceExpanderInline
        • SentenceExpanderInline.model
        • SentenceExpanderInline.form
        • SentenceExpanderInline.extra
        • SentenceExpanderInline.media
      • JoinerInline
        • JoinerInline.model
        • JoinerInline.form
        • JoinerInline.extra
        • JoinerInline.media
      • MLInferenceInline
        • MLInferenceInline.model
        • MLInferenceInline.form
        • MLInferenceInline.extra
        • MLInferenceInline.media
      • NLPSettingInline
        • NLPSettingInline.model
        • NLPSettingInline.extra
        • NLPSettingInline.inlines
        • NLPSettingInline.media
      • NLPSettingAdmin
        • NLPSettingAdmin.inlines
        • NLPSettingAdmin.media
    • nlpmed_portal.nlp.apps module
      • NLPConfig
        • NLPConfig.default_auto_field
        • NLPConfig.name
    • nlpmed_portal.nlp.constants module
    • nlpmed_portal.nlp.demo_urls module
    • nlpmed_portal.nlp.forms module
      • process_multiline_text()
      • MultilineJSONListWidget
        • MultilineJSONListWidget.format_value()
        • MultilineJSONListWidget.value_from_datadict()
        • MultilineJSONListWidget.media
      • BaseComponentForm
        • BaseComponentForm.get_initial_for_field()
        • BaseComponentForm.clean()
        • BaseComponentForm.has_changed()
        • BaseComponentForm.base_fields
        • BaseComponentForm.declared_fields
        • BaseComponentForm.media
      • EncodingFixerForm
        • EncodingFixerForm.Meta
          • EncodingFixerForm.Meta.model
          • EncodingFixerForm.Meta.fields
          • EncodingFixerForm.Meta.widgets
        • EncodingFixerForm.base_fields
        • EncodingFixerForm.declared_fields
        • EncodingFixerForm.media
      • PatternReplacerForm
        • PatternReplacerForm.Meta
          • PatternReplacerForm.Meta.model
          • PatternReplacerForm.Meta.fields
          • PatternReplacerForm.Meta.widgets
        • PatternReplacerForm.base_fields
        • PatternReplacerForm.declared_fields
        • PatternReplacerForm.media
      • WordMaskerForm
        • WordMaskerForm.Meta
          • WordMaskerForm.Meta.model
          • WordMaskerForm.Meta.fields
          • WordMaskerForm.Meta.widgets
        • WordMaskerForm.__init__()
        • WordMaskerForm.base_fields
        • WordMaskerForm.declared_fields
        • WordMaskerForm.media
      • NoteFilterForm
        • NoteFilterForm.Meta
          • NoteFilterForm.Meta.model
          • NoteFilterForm.Meta.fields
          • NoteFilterForm.Meta.widgets
        • NoteFilterForm.__init__()
        • NoteFilterForm.base_fields
        • NoteFilterForm.declared_fields
        • NoteFilterForm.media
      • SectionSplitterForm
        • SectionSplitterForm.Meta
          • SectionSplitterForm.Meta.model
          • SectionSplitterForm.Meta.fields
          • SectionSplitterForm.Meta.widgets
        • SectionSplitterForm.base_fields
        • SectionSplitterForm.declared_fields
        • SectionSplitterForm.media
      • SectionFilterForm
        • SectionFilterForm.Meta
          • SectionFilterForm.Meta.model
          • SectionFilterForm.Meta.fields
          • SectionFilterForm.Meta.widgets
        • SectionFilterForm.__init__()
        • SectionFilterForm.base_fields
        • SectionFilterForm.declared_fields
        • SectionFilterForm.media
      • SentenceSegmenterForm
        • SentenceSegmenterForm.Meta
          • SentenceSegmenterForm.Meta.model
          • SentenceSegmenterForm.Meta.fields
          • SentenceSegmenterForm.Meta.widgets
        • SentenceSegmenterForm.base_fields
        • SentenceSegmenterForm.declared_fields
        • SentenceSegmenterForm.media
      • DuplicateCheckerForm
        • DuplicateCheckerForm.Meta
          • DuplicateCheckerForm.Meta.model
          • DuplicateCheckerForm.Meta.fields
          • DuplicateCheckerForm.Meta.widgets
        • DuplicateCheckerForm.base_fields
        • DuplicateCheckerForm.declared_fields
        • DuplicateCheckerForm.media
      • SentenceFilterForm
        • SentenceFilterForm.Meta
          • SentenceFilterForm.Meta.model
          • SentenceFilterForm.Meta.fields
          • SentenceFilterForm.Meta.widgets
        • SentenceFilterForm.__init__()
        • SentenceFilterForm.base_fields
        • SentenceFilterForm.declared_fields
        • SentenceFilterForm.media
      • SentenceExpanderForm
        • SentenceExpanderForm.Meta
          • SentenceExpanderForm.Meta.model
          • SentenceExpanderForm.Meta.fields
          • SentenceExpanderForm.Meta.widgets
        • SentenceExpanderForm.base_fields
        • SentenceExpanderForm.declared_fields
        • SentenceExpanderForm.media
      • JoinerForm
        • JoinerForm.Meta
          • JoinerForm.Meta.model
          • JoinerForm.Meta.fields
          • JoinerForm.Meta.widgets
        • JoinerForm.base_fields
        • JoinerForm.declared_fields
        • JoinerForm.media
      • MLInferenceForm
        • MLInferenceForm.Meta
          • MLInferenceForm.Meta.model
          • MLInferenceForm.Meta.fields
          • MLInferenceForm.Meta.widgets
        • MLInferenceForm.base_fields
        • MLInferenceForm.declared_fields
        • MLInferenceForm.media
      • NLPForm
        • NLPForm.Meta
          • NLPForm.Meta.model
          • NLPForm.Meta.fields
          • NLPForm.Meta.widgets
        • NLPForm.base_fields
        • NLPForm.declared_fields
        • NLPForm.media
    • nlpmed_portal.nlp.models module
      • vte_section_inc_list()
      • vte_section_exc_list()
      • vte_keyword_inc_list()
      • vte_keyword_exc_list()
      • ComponentBase
        • ComponentBase.STATUS_CHOICES
        • ComponentBase.status
        • ComponentBase.Meta
          • ComponentBase.Meta.abstract
        • ComponentBase.get_status_display()
      • NLPSetting
        • NLPSetting.history
        • NLPSetting.debug
        • NLPSetting.project
        • NLPSetting.DoesNotExist
        • NLPSetting.MultipleObjectsReturned
        • NLPSetting.NotUpdated
        • NLPSetting.duplicate_checker
        • NLPSetting.encoding_fixer
        • NLPSetting.id
        • NLPSetting.joiner
        • NLPSetting.ml_inference
        • NLPSetting.note_filter
        • NLPSetting.objects
        • NLPSetting.pattern_replacer
        • NLPSetting.project_id
        • NLPSetting.save_without_historical_record()
        • NLPSetting.section_filter
        • NLPSetting.section_splitter
        • NLPSetting.sentence_expander
        • NLPSetting.sentence_filter
        • NLPSetting.sentence_segmenter
        • NLPSetting.word_masker
      • EncodingFixer
        • EncodingFixer.history
        • EncodingFixer.nlp_setting
        • EncodingFixer.DoesNotExist
        • EncodingFixer.MultipleObjectsReturned
        • EncodingFixer.NotUpdated
        • EncodingFixer.get_status_display()
        • EncodingFixer.id
        • EncodingFixer.nlp_setting_id
        • EncodingFixer.objects
        • EncodingFixer.save_without_historical_record()
        • EncodingFixer.status
      • PatternReplacer
        • PatternReplacer.history
        • PatternReplacer.nlp_setting
        • PatternReplacer.pattern
        • PatternReplacer.target
        • PatternReplacer.DoesNotExist
        • PatternReplacer.MultipleObjectsReturned
        • PatternReplacer.NotUpdated
        • PatternReplacer.get_status_display()
        • PatternReplacer.id
        • PatternReplacer.nlp_setting_id
        • PatternReplacer.objects
        • PatternReplacer.save_without_historical_record()
        • PatternReplacer.status
      • WordMasker
        • WordMasker.history
        • WordMasker.nlp_setting
        • WordMasker.words_to_mask
        • WordMasker.mask_char
        • WordMasker.DoesNotExist
        • WordMasker.MultipleObjectsReturned
        • WordMasker.NotUpdated
        • WordMasker.get_status_display()
        • WordMasker.id
        • WordMasker.nlp_setting_id
        • WordMasker.objects
        • WordMasker.save_without_historical_record()
        • WordMasker.status
      • NoteFilter
        • NoteFilter.history
        • NoteFilter.nlp_setting
        • NoteFilter.words_to_search
        • NoteFilter.DoesNotExist
        • NoteFilter.MultipleObjectsReturned
        • NoteFilter.NotUpdated
        • NoteFilter.get_status_display()
        • NoteFilter.id
        • NoteFilter.nlp_setting_id
        • NoteFilter.objects
        • NoteFilter.save_without_historical_record()
        • NoteFilter.status
      • SectionSplitter
        • SectionSplitter.history
        • SectionSplitter.nlp_setting
        • SectionSplitter.delimiter
        • SectionSplitter.DoesNotExist
        • SectionSplitter.MultipleObjectsReturned
        • SectionSplitter.NotUpdated
        • SectionSplitter.get_status_display()
        • SectionSplitter.id
        • SectionSplitter.nlp_setting_id
        • SectionSplitter.objects
        • SectionSplitter.save_without_historical_record()
        • SectionSplitter.status
      • SectionFilter
        • SectionFilter.history
        • SectionFilter.nlp_setting
        • SectionFilter.section_inc_list
        • SectionFilter.section_exc_list
        • SectionFilter.fallback
        • SectionFilter.DoesNotExist
        • SectionFilter.MultipleObjectsReturned
        • SectionFilter.NotUpdated
        • SectionFilter.get_status_display()
        • SectionFilter.id
        • SectionFilter.nlp_setting_id
        • SectionFilter.objects
        • SectionFilter.save_without_historical_record()
        • SectionFilter.status
      • SentenceSegmenter
        • SentenceSegmenter.history
        • SentenceSegmenter.nlp_setting
        • SentenceSegmenter.model_name
        • SentenceSegmenter.batch_size
        • SentenceSegmenter.DoesNotExist
        • SentenceSegmenter.MultipleObjectsReturned
        • SentenceSegmenter.NotUpdated
        • SentenceSegmenter.get_model_name_display()
        • SentenceSegmenter.get_status_display()
        • SentenceSegmenter.id
        • SentenceSegmenter.nlp_setting_id
        • SentenceSegmenter.objects
        • SentenceSegmenter.save_without_historical_record()
        • SentenceSegmenter.status
      • DuplicateChecker
        • DuplicateChecker.history
        • DuplicateChecker.nlp_setting
        • DuplicateChecker.num_perm
        • DuplicateChecker.sim_threshold
        • DuplicateChecker.length_threshold
        • DuplicateChecker.DoesNotExist
        • DuplicateChecker.MultipleObjectsReturned
        • DuplicateChecker.NotUpdated
        • DuplicateChecker.get_status_display()
        • DuplicateChecker.id
        • DuplicateChecker.nlp_setting_id
        • DuplicateChecker.objects
        • DuplicateChecker.save_without_historical_record()
        • DuplicateChecker.status
      • SentenceFilter
        • SentenceFilter.history
        • SentenceFilter.nlp_setting
        • SentenceFilter.words_to_search
        • SentenceFilter.DoesNotExist
        • SentenceFilter.MultipleObjectsReturned
        • SentenceFilter.NotUpdated
        • SentenceFilter.get_status_display()
        • SentenceFilter.id
        • SentenceFilter.nlp_setting_id
        • SentenceFilter.objects
        • SentenceFilter.save_without_historical_record()
        • SentenceFilter.status
      • SentenceExpander
        • SentenceExpander.history
        • SentenceExpander.nlp_setting
        • SentenceExpander.length_threshold
        • SentenceExpander.DoesNotExist
        • SentenceExpander.MultipleObjectsReturned
        • SentenceExpander.NotUpdated
        • SentenceExpander.get_status_display()
        • SentenceExpander.id
        • SentenceExpander.nlp_setting_id
        • SentenceExpander.objects
        • SentenceExpander.save_without_historical_record()
        • SentenceExpander.status
      • Joiner
        • Joiner.history
        • Joiner.nlp_setting
        • Joiner.sentence_delimiter
        • Joiner.section_delimiter
        • Joiner.DoesNotExist
        • Joiner.MultipleObjectsReturned
        • Joiner.NotUpdated
        • Joiner.get_status_display()
        • Joiner.id
        • Joiner.nlp_setting_id
        • Joiner.objects
        • Joiner.save_without_historical_record()
        • Joiner.status
      • MLInference
        • MLInference.history
        • MLInference.nlp_setting
        • MLInference.model_name
        • MLInference.use_preped_text
        • MLInference.DoesNotExist
        • MLInference.MultipleObjectsReturned
        • MLInference.NotUpdated
        • MLInference.get_model_name_display()
        • MLInference.get_status_display()
        • MLInference.id
        • MLInference.nlp_setting_id
        • MLInference.objects
        • MLInference.save_without_historical_record()
        • MLInference.status
      • NLP
        • NLP.DoesNotExist
        • NLP.MultipleObjectsReturned
        • NLP.NotUpdated
        • NLP.id
        • NLP.objects
      • NlpProcessJob
        • NlpProcessJob.STATUS_CHOICES
        • NlpProcessJob.project
        • NlpProcessJob.user
        • NlpProcessJob.patient_pks
        • NlpProcessJob.job_status
        • NlpProcessJob.total_count
        • NlpProcessJob.completed_count
        • NlpProcessJob.error_message
        • NlpProcessJob.created_at
        • NlpProcessJob.updated_at
        • NlpProcessJob.job_progress
        • NlpProcessJob.mark_in_progress()
        • NlpProcessJob.mark_completed()
        • NlpProcessJob.mark_failed()
        • NlpProcessJob.DoesNotExist
        • NlpProcessJob.MultipleObjectsReturned
        • NlpProcessJob.NotUpdated
        • NlpProcessJob.get_job_status_display()
        • NlpProcessJob.get_next_by_created_at()
        • NlpProcessJob.get_next_by_updated_at()
        • NlpProcessJob.get_previous_by_created_at()
        • NlpProcessJob.get_previous_by_updated_at()
        • NlpProcessJob.id
        • NlpProcessJob.objects
        • NlpProcessJob.project_id
        • NlpProcessJob.user_id
    • nlpmed_portal.nlp.task_dispatch module
      • dispatch_nlp_job()
    • nlpmed_portal.nlp.tasks module
      • chunked_nlp_master_task()
      • process_patient_chunk()
      • finalize_nlp_job()
    • nlpmed_portal.nlp.urls module
    • nlpmed_portal.nlp.utils module
      • process_patient_api_call()
      • process_patient_write_db()
    • nlpmed_portal.nlp.views module
      • NLPPageView
        • NLPPageView.permission_required
        • NLPPageView.template_name
        • NLPPageView.COMPONENT_MODELS
        • NLPPageView.get_context_data()
        • NLPPageView.dispatch()
      • VteBertDemoPageView
        • VteBertDemoPageView.template_name
        • VteBertDemoPageView.get_context_data()
        • VteBertDemoPageView.dispatch()
      • BleedBertDemoPageView
        • BleedBertDemoPageView.template_name
        • BleedBertDemoPageView.get_context_data()
        • BleedBertDemoPageView.dispatch()
• nlpmed_portal.users package
  • Subpackages
    • nlpmed_portal.users.api package
      • Submodules
        • nlpmed_portal.users.api.serializers module
          • UserSerializer
        • nlpmed_portal.users.api.views module
          • UserViewSet
  • Submodules
    • nlpmed_portal.users.adapters module
      • AccountAdapter
        • AccountAdapter.is_open_for_signup()
    • nlpmed_portal.users.admin module
      • UserAdmin
        • UserAdmin.form
        • UserAdmin.add_form
        • UserAdmin.fieldsets
        • UserAdmin.list_display
        • UserAdmin.search_fields
        • UserAdmin.media
    • nlpmed_portal.users.apps module
      • UsersConfig
        • UsersConfig.name
        • UsersConfig.verbose_name
        • UsersConfig.ready()
    • nlpmed_portal.users.context_processors module
      • allauth_settings()
    • nlpmed_portal.users.forms module
      • UserAdminChangeForm
        • UserAdminChangeForm.Meta
          • UserAdminChangeForm.Meta.model
        • UserAdminChangeForm.base_fields
        • UserAdminChangeForm.declared_fields
        • UserAdminChangeForm.media
      • UserAdminCreationForm
        • UserAdminCreationForm.Meta
          • UserAdminCreationForm.Meta.model
          • UserAdminCreationForm.Meta.error_messages
        • UserAdminCreationForm.base_fields
        • UserAdminCreationForm.declared_fields
        • UserAdminCreationForm.media
      • UserSignupForm
        • UserSignupForm.base_fields
        • UserSignupForm.declared_fields
        • UserSignupForm.media
      • UserUpdateForm
        • UserUpdateForm.Meta
          • UserUpdateForm.Meta.model
          • UserUpdateForm.Meta.fields
        • UserUpdateForm.__init__()
        • UserUpdateForm.base_fields
        • UserUpdateForm.declared_fields
        • UserUpdateForm.media
    • nlpmed_portal.users.models module
      • User
        • User.name
        • User.first_name
        • User.last_name
        • User.is_active
        • User.get_absolute_url()
        • User.DoesNotExist
        • User.MultipleObjectsReturned
        • User.NotUpdated
        • User.adjudications
        • User.auth_token
        • User.date_joined
        • User.email
        • User.emailaddress_set
        • User.feedback_set
        • User.get_next_by_date_joined()
        • User.get_previous_by_date_joined()
        • User.groups
        • User.id
        • User.importjob_set
        • User.is_staff
        • User.is_superuser
        • User.last_login
        • User.logentry_set
        • User.ner_annotations
        • User.nlpprocessjob_set
        • User.password
        • User.patient_annotations
        • User.project_memberships_assignee
        • User.project_memberships_assigner
        • User.tasks_assignee
        • User.tasks_assigner
        • User.user_permissions
        • User.username
        • User.usersession_set
    • nlpmed_portal.users.signals module
      • log_hijack_start()
      • log_hijack_end()
      • activate_superuser_on_save()
    • nlpmed_portal.users.urls module
    • nlpmed_portal.users.views module
      • UserUpdateView
        • UserUpdateView.model
        • UserUpdateView.form_class
        • UserUpdateView.success_message
        • UserUpdateView.template_name
        • UserUpdateView.get_success_url()
        • UserUpdateView.get_object()
        • UserUpdateView.dispatch()
      • UserChangePwdView
        • UserChangePwdView.template_name
        • UserChangePwdView.get_success_url()
        • UserChangePwdView.dispatch()
      • UserRedirectView
        • UserRedirectView.permanent
        • UserRedirectView.get_redirect_url()
      • ListUserSessionsView
        • ListUserSessionsView.template_name
        • ListUserSessionsView.form_class
        • ListUserSessionsView.success_url
        • ListUserSessionsView.get_context_data()
        • ListUserSessionsView.get_form_kwargs()
        • ListUserSessionsView.form_valid()
        • ListUserSessionsView.dispatch()

Submodules

• nlpmed_portal.cli module
  • main()
• nlpmed_portal.context_processors module
  • general_settings()
  • system_message()