nlpmed_portal.annotations.models module

class nlpmed_portal.annotations.models.Project

Bases: Model

Project(id, name, description, disp_range_months_before_idx, disp_range_months_after_idx, run_nlp, annotation_type, required_patient_annotations, required_patient_adjudications, created_at, updated_at)

CLASSIFICATION = 'classification'

NER = 'ner'

ANNOTATION_TYPE_CHOICES = [('classification', 'Classification'), ('ner', 'Named-Entity Recognition')]

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

name

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

description

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

disp_range_months_before_idx

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

disp_range_months_after_idx

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

run_nlp

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

annotation_type

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

required_patient_annotations

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

required_patient_adjudications

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

get_annotation_type_display(*, field=<django.db.models.fields.CharField: annotation_type>)

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

import_jobs

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

label_categories

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

nlp_jobs

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

nlp_setting

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

objects = <django.db.models.manager.Manager object>

patients

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

project_memberships_project

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

class nlpmed_portal.annotations.models.LabelCategory

Bases: Model

LabelCategory(id, name, project)

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

name

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

project

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

label_values

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

objects = <django.db.models.manager.Manager object>

project_id

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

class nlpmed_portal.annotations.models.LabelValue

Bases: Model

LabelValue(id, name, category)

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

name

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

category

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

adjudications

Accessor to the related objects manager on the forward and reverse sides of a many-to-many relation.

In the example:

class Pizza(Model):
    toppings = ManyToManyField(Topping, related_name='pizzas')

Pizza.toppings and Topping.pizzas are ManyToManyDescriptor instances.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

category_id

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

objects = <django.db.models.manager.Manager object>

patient_annotations

Accessor to the related objects manager on the forward and reverse sides of a many-to-many relation.

In the example:

class Pizza(Model):
    toppings = ManyToManyField(Topping, related_name='pizzas')

Pizza.toppings and Topping.pizzas are ManyToManyDescriptor instances.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

class nlpmed_portal.annotations.models.Patient

Bases: Model

Patient(id, pat_id, index_date, project, created_at, updated_at)

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

pat_id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

index_date

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

project

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

adjudications

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_index_date(*, field=<django.db.models.fields.DateField: index_date>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_index_date(*, field=<django.db.models.fields.DateField: index_date>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

labs

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

ner_annotations

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

notes

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

objects = <django.db.models.manager.Manager object>

patient_annotations

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

project_id

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

tasks_patient

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

class nlpmed_portal.annotations.models.Note

Bases: Model

Note(id, note_id, note_text, note_date, note_type, patient, preprocessed_text, predicted_label, predicted_score, important_sentences_count, duplicate_sentences_count, created_at, updated_at)

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

note_id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

note_text

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

note_date

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

TYPE_CHOICES = [('progress', 'Progress Note'), ('radiology', 'Radiology Note'), ('discharge', 'Discharge Summary')]

note_type

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

patient

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

preprocessed_text

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

predicted_label

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

predicted_score

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

important_sentences_count

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

duplicate_sentences_count

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

adjudications

Accessor to the related objects manager on the forward and reverse sides of a many-to-many relation.

In the example:

class Pizza(Model):
    toppings = ManyToManyField(Topping, related_name='pizzas')

Pizza.toppings and Topping.pizzas are ManyToManyDescriptor instances.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_note_date(*, field=<django.db.models.fields.DateField: note_date>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_note_type_display(*, field=<django.db.models.fields.CharField: note_type>)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_note_date(*, field=<django.db.models.fields.DateField: note_date>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

ner_annotations

Accessor to the related object on the reverse side of a one-to-one relation.

In the example:

class Restaurant(Model):
    place = OneToOneField(Place, related_name='restaurant')

Place.restaurant is a ReverseOneToOneDescriptor instance.

note_sections

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

objects = <django.db.models.manager.Manager object>

patient_annotations

Accessor to the related objects manager on the forward and reverse sides of a many-to-many relation.

In the example:

class Pizza(Model):
    toppings = ManyToManyField(Topping, related_name='pizzas')

Pizza.toppings and Topping.pizzas are ManyToManyDescriptor instances.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

patient_id

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

class nlpmed_portal.annotations.models.Lab

Bases: Model

Lab(id, lab_id, patient, component, collection_datetime, value, unit, abnormal, created_at, updated_at)

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

lab_id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

patient

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

component

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

collection_datetime

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

value

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

unit

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

abnormal

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

get_next_by_collection_datetime(*, field=<django.db.models.fields.DateTimeField: collection_datetime>, is_next=True, **kwargs)

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_previous_by_collection_datetime(*, field=<django.db.models.fields.DateTimeField: collection_datetime>, is_next=False, **kwargs)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

objects = <django.db.models.manager.Manager object>

patient_id

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

class nlpmed_portal.annotations.models.Section

Bases: Model

Section(id, text, start_index, end_index, note, created_at, updated_at)

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

text

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

start_index

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

end_index

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

note

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

property important_sentences

property duplicate_sentences

property expanded_sentences

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

note_id

objects = <django.db.models.manager.Manager object>

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

section_sentences

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

class nlpmed_portal.annotations.models.Sentence

Bases: Model

Sentence(id, text, start_index, end_index, is_duplicate, is_important, is_expanded, section)

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

text

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

start_index

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

end_index

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

is_duplicate

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

is_important

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

is_expanded

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

section

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

objects = <django.db.models.manager.Manager object>

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

section_id

class nlpmed_portal.annotations.models.PatientAnnotation

Bases: Model

PatientAnnotation(id, event_date, comment, patient, annotator, created_at, updated_at)

event_date

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

event_label_values

Accessor to the related objects manager on the forward and reverse sides of a many-to-many relation.

In the example:

class Pizza(Model):
    toppings = ManyToManyField(Topping, related_name='pizzas')

Pizza.toppings and Topping.pizzas are ManyToManyDescriptor instances.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

comment

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

patient

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

annotator

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

notes

Accessor to the related objects manager on the forward and reverse sides of a many-to-many relation.

In the example:

class Pizza(Model):
    toppings = ManyToManyField(Topping, related_name='pizzas')

Pizza.toppings and Topping.pizzas are ManyToManyDescriptor instances.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

adjudications

Accessor to the related objects manager on the forward and reverse sides of a many-to-many relation.

In the example:

class Pizza(Model):
    toppings = ManyToManyField(Topping, related_name='pizzas')

Pizza.toppings and Topping.pizzas are ManyToManyDescriptor instances.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

annotator_id

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

objects = <django.db.models.manager.Manager object>

patient_id

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

class nlpmed_portal.annotations.models.Adjudication

Bases: Model

Adjudication(id, patient, event_date, adjudicator, created_at, updated_at)

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

patient

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

event_date

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

event_label_values

Accessor to the related objects manager on the forward and reverse sides of a many-to-many relation.

In the example:

class Pizza(Model):
    toppings = ManyToManyField(Topping, related_name='pizzas')

Pizza.toppings and Topping.pizzas are ManyToManyDescriptor instances.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

adjudicator

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

notes

Accessor to the related objects manager on the forward and reverse sides of a many-to-many relation.

In the example:

class Pizza(Model):
    toppings = ManyToManyField(Topping, related_name='pizzas')

Pizza.toppings and Topping.pizzas are ManyToManyDescriptor instances.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

source_annotations

Accessor to the related objects manager on the forward and reverse sides of a many-to-many relation.

In the example:

class Pizza(Model):
    toppings = ManyToManyField(Topping, related_name='pizzas')

Pizza.toppings and Topping.pizzas are ManyToManyDescriptor instances.

Most of the implementation is delegated to a dynamically defined manager class built by create_forward_many_to_many_manager() defined below.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

adjudicator_id

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_event_date(*, field=<django.db.models.fields.DateField: event_date>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_event_date(*, field=<django.db.models.fields.DateField: event_date>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

objects = <django.db.models.manager.Manager object>

patient_id

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

class nlpmed_portal.annotations.models.ProjectMembership

Bases: Model

ProjectMembership(id, assignee, project, group, assigner, created_at, updated_at)

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

assignee

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

project

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

group

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

assigner

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

assignee_id

assigner_id

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

group_id

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

objects = <django.db.models.manager.Manager object>

project_id

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

class nlpmed_portal.annotations.models.Task

Bases: Model

Task(id, assignee, patient, assigner, task_type, status, created_at, updated_at)

STATUS_CHOICES = [('pending', 'Pending'), ('completed', 'Completed'), ('closed', 'Closed (not needed)')]

CLASSIFICATION = 'classification'

NER = 'ner'

ADJUDICATION = 'adjudication'

TYPE_CHOICES = [('classification', 'Classification'), ('ner', 'NER'), ('adjudication', 'Adjudication')]

assignee

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

patient

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

assigner

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

task_type

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

status

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

assignee_id

assigner_id

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

get_status_display(*, field=<django.db.models.fields.CharField: status>)

get_task_type_display(*, field=<django.db.models.fields.CharField: task_type>)

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

objects = <django.db.models.manager.Manager object>

patient_id

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

class nlpmed_portal.annotations.models.ImportJob

Bases: Model

ImportJob(id, project, user, import_file, import_format, import_target, import_missing_patients, column_map, date_format_map, new_rows_count, job_status, job_progress, error_message, created_at, updated_at)

STATUS_CHOICES = (('uploaded', 'Uploaded'), ('in_progress', 'In Progress'), ('completed', 'Completed'), ('failed', 'Failed'))

project

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

user

Accessor to the related object on the forward side of a many-to-one or one-to-one (via ForwardOneToOneDescriptor subclass) relation.

In the example:

class Child(Model):
    parent = ForeignKey(Parent, related_name='children')

Child.parent is a ForwardManyToOneDescriptor instance.

import_file

The descriptor for the file attribute on the model instance. Return a FieldFile when accessed so you can write code like:

>>> from myapp.models import MyModel
>>> instance = MyModel.objects.get(pk=1)
>>> instance.file.size

Assign a file object on assignment so you can do:

>>> with open('/path/to/hello.world') as f:
...     instance.file = File(f)

import_format

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

import_target

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

import_missing_patients

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

column_map

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

date_format_map

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

new_rows_count

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

job_status

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

job_progress

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

error_message

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

delete_import_file(*, save=True)

Delete the uploaded source file after it is no longer needed.

Parameters:

save (bool)

Return type:

None

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

get_import_target_display(*, field=<django.db.models.fields.CharField: import_target>)

get_job_status_display(*, field=<django.db.models.fields.CharField: job_status>)

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

objects = <django.db.models.manager.Manager object>

project_id

user_id

class nlpmed_portal.annotations.models.NERAnnotation

Bases: Model

NERAnnotation(patient, annotator, note, spans, created_at, updated_at)

history = <django.db.models.manager.HistoryManagerFromHistoricalQuerySet object>

patient

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

annotator

Overrides get_queryset to provide historic query support, should the instance be historic (and therefore was generated by a timepoint query) and the other side of the relation also uses a history manager.

note

Accessor to the related object on the forward side of a one-to-one relation.

In the example:

class Restaurant(Model):
    place = OneToOneField(Place, related_name='restaurant')

Restaurant.place is a ForwardOneToOneDescriptor instance.

spans

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

created_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

updated_at

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

annotator_id

get_next_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=True, **kwargs)

get_next_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=True, **kwargs)

get_previous_by_created_at(*, field=<django.db.models.fields.DateTimeField: created_at>, is_next=False, **kwargs)

get_previous_by_updated_at(*, field=<django.db.models.fields.DateTimeField: updated_at>, is_next=False, **kwargs)

note_id

objects = <django.db.models.manager.Manager object>

patient_id

save_without_historical_record(*args, **kwargs)

Save the model instance without creating a historical record.

Make sure you know what you’re doing before using this method.

class nlpmed_portal.annotations.models.ExportAnnotation

Bases: Model

ExportAnnotation(id)

exception DoesNotExist

Bases: ObjectDoesNotExist

exception MultipleObjectsReturned

Bases: MultipleObjectsReturned

exception NotUpdated

Bases: ObjectNotUpdated, DatabaseError

id

A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.

objects = <django.db.models.manager.Manager object>