nlpmed_engine package

Subpackages

• nlpmed_engine.api package
  • Submodules
  • nlpmed_engine.api.main module
    • health_check()
  • nlpmed_engine.api.mappers module
    • map_internal_to_pydantic_note_model()
    • map_internal_to_pydantic_patient_model()
    • map_internal_to_pydantic_section_model()
    • map_internal_to_pydantic_sentence_model()
    • map_pydantic_to_internal_note()
    • map_pydantic_to_internal_patient()
    • map_pydantic_to_internal_section()
    • map_pydantic_to_internal_sentence()
  • nlpmed_engine.api.models module
    • ComponentStatusModel
      • ComponentStatusModel.model_config
      • ComponentStatusModel.status
    • ConfigModel
      • ConfigModel.debug
      • ConfigModel.duplicate_checker
      • ConfigModel.encoding_fixer
      • ConfigModel.joiner
      • ConfigModel.ml_inference
      • ConfigModel.model_config
      • ConfigModel.note_filter
      • ConfigModel.pattern_replacer
      • ConfigModel.section_filter
      • ConfigModel.section_splitter
      • ConfigModel.sentence_expander
      • ConfigModel.sentence_filter
      • ConfigModel.sentence_segmenter
      • ConfigModel.word_masker
    • DuplicateCheckerModel
      • DuplicateCheckerModel.length_threshold
      • DuplicateCheckerModel.model_config
      • DuplicateCheckerModel.num_perm
      • DuplicateCheckerModel.sim_threshold
    • EncodingFixerModel
      • EncodingFixerModel.model_config
    • JoinerModel
      • JoinerModel.model_config
      • JoinerModel.section_delimiter
      • JoinerModel.sentence_delimiter
    • MLInferenceModel
      • MLInferenceModel.device
      • MLInferenceModel.ml_model_path
      • MLInferenceModel.ml_tokenizer_path
      • MLInferenceModel.model_config
    • MlModelInfo
      • MlModelInfo.device
      • MlModelInfo.loaded
      • MlModelInfo.loaded_at
      • MlModelInfo.max_length
      • MlModelInfo.model_config
      • MlModelInfo.name
    • MlModelsResponse
      • MlModelsResponse.default_name
      • MlModelsResponse.model_config
      • MlModelsResponse.models
    • NoteFilterModel
      • NoteFilterModel.model_config
      • NoteFilterModel.words_to_search
    • NoteModel
      • NoteModel.model_config
      • NoteModel.note_id
      • NoteModel.predicted_label
      • NoteModel.predicted_score
      • NoteModel.preprocessed_text
      • NoteModel.sections
      • NoteModel.text
    • PatientModel
      • PatientModel.model_config
      • PatientModel.notes
      • PatientModel.patient_id
    • PatternReplacerModel
      • PatternReplacerModel.model_config
      • PatternReplacerModel.pattern
      • PatternReplacerModel.target
    • SectionFilterModel
      • SectionFilterModel.fallback
      • SectionFilterModel.model_config
      • SectionFilterModel.section_exc_list
      • SectionFilterModel.section_inc_list
    • SectionModel
      • SectionModel.duplicate_indices
      • SectionModel.end_index
      • SectionModel.expanded_indices
      • SectionModel.important_indices
      • SectionModel.is_important
      • SectionModel.model_config
      • SectionModel.sentences
      • SectionModel.start_index
      • SectionModel.text
    • SectionSplitterModel
      • SectionSplitterModel.delimiter
      • SectionSplitterModel.model_config
    • SentenceExpanderModel
      • SentenceExpanderModel.length_threshold
      • SentenceExpanderModel.model_config
    • SentenceFilterModel
      • SentenceFilterModel.model_config
      • SentenceFilterModel.words_to_search
    • SentenceModel
      • SentenceModel.end_index
      • SentenceModel.is_duplicate
      • SentenceModel.is_expanded
      • SentenceModel.is_important
      • SentenceModel.model_config
      • SentenceModel.start_index
      • SentenceModel.text
    • SentenceSegmenterModel
      • SentenceSegmenterModel.batch_size
      • SentenceSegmenterModel.model_config
      • SentenceSegmenterModel.nlp_model_name
    • StringInputModel
      • StringInputModel.model_config
      • StringInputModel.text
    • TextProcessingResponseModel
      • TextProcessingResponseModel.model_config
      • TextProcessingResponseModel.note
      • TextProcessingResponseModel.predicted_label
      • TextProcessingResponseModel.predicted_score
      • TextProcessingResponseModel.preprocessed_text
    • WordMaskerModel
      • WordMaskerModel.mask_char
      • WordMaskerModel.model_config
      • WordMaskerModel.words_to_mask
  • nlpmed_engine.api.routes module
    • get_batch_pipeline()
    • get_single_pipeline()
    • ml_models()
    • process_batch_patients()
    • process_patient()
    • process_text()
  • Module contents
• nlpmed_engine.components package
  • Submodules
  • nlpmed_engine.components.duplicate_checker module
    • DuplicateChecker
      • DuplicateChecker.add_sentence()
      • DuplicateChecker.clear_lsh()
      • DuplicateChecker.get_minhash()
      • DuplicateChecker.is_duplicate()
      • DuplicateChecker.process()
  • nlpmed_engine.components.encoding_fixer module
    • EncodingFixer
      • EncodingFixer.process()
  • nlpmed_engine.components.joiner module
    • Joiner
      • Joiner.process()
  • nlpmed_engine.components.ml_inference module
    • LoadedMeta
      • LoadedMeta.device
      • LoadedMeta.loaded_at
      • LoadedMeta.max_length
      • LoadedMeta.name
    • MLInference
      • MLInference.get_loaded_meta()
      • MLInference.process()
      • MLInference.process_batch_patients()
  • nlpmed_engine.components.note_filter module
    • NoteFilter
      • NoteFilter.process()
  • nlpmed_engine.components.pattern_replacer module
    • PatternReplacer
      • PatternReplacer.process()
  • nlpmed_engine.components.section_filter module
    • SectionFilter
      • SectionFilter.process()
  • nlpmed_engine.components.section_splitter module
    • SectionSplitter
      • SectionSplitter.process()
  • nlpmed_engine.components.sentence_expander module
    • SentenceExpander
      • SentenceExpander.expand_section_sentences()
      • SentenceExpander.process()
  • nlpmed_engine.components.sentence_filter module
    • SentenceFilter
      • SentenceFilter.process()
  • nlpmed_engine.components.sentence_segmenter module
    • SentenceSegmenter
      • SentenceSegmenter.process()
      • SentenceSegmenter.process_batch_patients()
  • nlpmed_engine.components.word_masker module
    • WordMasker
      • WordMasker.process()
  • Module contents
• nlpmed_engine.data_structures package
  • Submodules
  • nlpmed_engine.data_structures.note module
    • Note
      • Note.note_id
      • Note.predicted_label
      • Note.predicted_score
      • Note.preprocessed_text
      • Note.sections
      • Note.text
  • nlpmed_engine.data_structures.patient module
    • Patient
      • Patient.add_note()
      • Patient.from_json()
      • Patient.notes
      • Patient.patient_id
  • nlpmed_engine.data_structures.section module
    • Section
      • Section.duplicate_indices
      • Section.end_index
      • Section.expanded_indices
      • Section.important_indices
      • Section.is_important
      • Section.sentences
      • Section.start_index
      • Section.text
  • nlpmed_engine.data_structures.sentence module
    • Sentence
      • Sentence.end_index
      • Sentence.is_duplicate
      • Sentence.is_expanded
      • Sentence.is_important
      • Sentence.start_index
      • Sentence.text
  • Module contents
• nlpmed_engine.pipelines package
  • Submodules
  • nlpmed_engine.pipelines.base_pipeline module
    • BasePipeline
      • BasePipeline.initializer()
      • BasePipeline.preprocess_params()
    • ComponentDict
      • ComponentDict.component
      • ComponentDict.status
  • nlpmed_engine.pipelines.batch_pipeline module
    • BatchPipeline
      • BatchPipeline.process()
  • nlpmed_engine.pipelines.single_pipeline module
    • SinglePipeline
      • SinglePipeline.process()
  • Module contents
• nlpmed_engine.utils package
  • Submodules
  • nlpmed_engine.utils.utils module
    • ModelSpec
      • ModelSpec.device
      • ModelSpec.max_length
      • ModelSpec.model_path
      • ModelSpec.tokenizer_path
    • build_initial_config()
    • get_effective_param()
    • read_models_from_env()
  • Module contents

Submodules

nlpmed_engine.about module

Version information for NLPMed-Engine.

Module contents

NLPMed-Engine public package interface.